Type: Package
Package: sdmTMB
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Version: 0.3.0
Authors@R: c(
    person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9563-1937")),
    person(c("Eric", "J."), "Ward", role = "aut",
           comment = c(ORCID = "0000-0002-4359-0296")),
    person(c("Lewis", "A.", "K."), "Barnett", role = "aut",
           comment = c(ORCID = "0000-0002-9381-8375")),
    person(c("Philina", "A."), "English", role = "aut",
           comment = c(ORCID = "0000-0003-2992-6782")),
    person(c("James", "T."), "Thorson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-7415-1010", "VAST author")),
    person("Joe", "Watson", role = "ctb", comment = "Censored Poisson"),
    person("Julia", "Indivero", role = c("ctb"),
           comment = c("Vignette writing")),
    person(c("Cole", "C."), "Monnahan", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-0871-6700", "VAST contributor")),
    person("Mollie", "Brooks", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-6963-8326", "glmmTMB author")),
    person("Ben", "Bolker", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-2127-0443", "glmmTMB author")),
    person("Kasper", "Kristensen", role = c("ctb", "cph"),
           comment = "TMB/glmmTMB author"),
    person("Martin", "Maechler", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-8685-9910", "glmmTMB author")),
    person("Arni", "Magnusson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-2769-6741", "glmmTMB author")),
    person(c("Hans", "J."), "Skaug", role = c("ctb", "cph"),
           comment = "glmmTMB author, SPDE barrier"),
    person("Anders", "Nielsen", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-9683-9262", "glmmTMB author")),
    person("Casper", "Berg", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-3812-5269", "glmmTMB author")),
    person("Koen", "van Bentham", role = c("ctb", "cph"),
           comment = "glmmTMB author"),
    person(c("Olav", "Nikolai"), "Breivik", role = c("ctb", "cph"),
           comment = "SPDE barrier"),
    person("Simon", "Wood", role = c("ctb", "cph"),
           comment = "mgcv: smoother prediction"),
    person("Paul-Christian", "Bürkner", role = c("ctb", "cph"),
           comment = "brms: smoother matrix parsing"),
    person(paste("His Majesty the King in Right of Canada, as represented by",
           "the Minister of the Department of Fisheries and Oceans"),
           role = "cph")
  )
Description: Implements spatial and spatiotemporal predictive-process GLMMs
    (Generalized Linear Mixed Effect Models) using 'TMB', 'INLA', and the SPDE
    (Stochastic Partial Differential Equation) approximation to Gaussian random
    fields. One common application is for spatially explicit (and optionally
    dynamic) species distribution models (SDMs). See Anderson et al. (2022)
    <doi:10.1101/2022.03.24.485545>.
License: GPL-3
Copyright: inst/COPYRIGHTS
URL: https://pbs-assess.github.io/sdmTMB/index.html,
        https://pbs-assess.github.io/sdmTMB/
BugReports: https://github.com/pbs-assess/sdmTMB/issues
Depends: R (>= 3.5.0)
Imports: assertthat, clisymbols, cli, fishMod, generics, glmmTMB,
        graphics, lifecycle, Matrix, methods, mgcv, mvtnorm, nlme,
        rlang, stats, TMB (>= 1.8.0)
Suggests: dplyr, effects (>= 4.0-1), estimability, emmeans (>= 1.4),
        future, future.apply, ggeffects, ggforce, ggplot2, knitr, lme4,
        rgdal, rmarkdown, sf, splancs, testthat, tibble, visreg
LinkingTo: RcppEigen, TMB
VignetteBuilder: knitr
Additional_repositories: https://inla.r-inla-download.org/R/stable
ByteCompile: true
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
SystemRequirements: GNU make, C++17
Author: Sean C. Anderson [aut, cre] (<https://orcid.org/0000-0001-9563-1937>),
  Eric J. Ward [aut] (<https://orcid.org/0000-0002-4359-0296>),
  Lewis A. K. Barnett [aut] (<https://orcid.org/0000-0002-9381-8375>),
  Philina A. English [aut] (<https://orcid.org/0000-0003-2992-6782>),
  James T. Thorson [ctb, cph] (<https://orcid.org/0000-0001-7415-1010>,
    VAST author),
  Joe Watson [ctb] (Censored Poisson),
  Julia Indivero [ctb] (Vignette writing),
  Cole C. Monnahan [ctb, cph] (<https://orcid.org/0000-0003-0871-6700>,
    VAST contributor),
  Mollie Brooks [ctb, cph] (<https://orcid.org/0000-0001-6963-8326>,
    glmmTMB author),
  Ben Bolker [ctb, cph] (<https://orcid.org/0000-0002-2127-0443>, glmmTMB
    author),
  Kasper Kristensen [ctb, cph] (TMB/glmmTMB author),
  Martin Maechler [ctb, cph] (<https://orcid.org/0000-0002-8685-9910>,
    glmmTMB author),
  Arni Magnusson [ctb, cph] (<https://orcid.org/0000-0003-2769-6741>,
    glmmTMB author),
  Hans J. Skaug [ctb, cph] (glmmTMB author, SPDE barrier),
  Anders Nielsen [ctb, cph] (<https://orcid.org/0000-0001-9683-9262>,
    glmmTMB author),
  Casper Berg [ctb, cph] (<https://orcid.org/0000-0002-3812-5269>,
    glmmTMB author),
  Koen van Bentham [ctb, cph] (glmmTMB author),
  Olav Nikolai Breivik [ctb, cph] (SPDE barrier),
  Simon Wood [ctb, cph] (mgcv: smoother prediction),
  Paul-Christian Bürkner [ctb, cph] (brms: smoother matrix parsing),
  His Majesty the King in Right of Canada, as represented by the Minister
    of the Department of Fisheries and Oceans [cph]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Built: R 4.3.1; powerpc-apple-darwin10.0.0d2; 2023-06-25 09:06:47 UTC; unix
