Three
INLA::inla.getOption()
/INLA::inla.setOption()
options control the transition behaviour of the INLA
package use of fmesher
.
fmesher.evolution
, integer:
1L
uses the intermediate fm_*
methods in
fmesher
that were already available via inlabru from 2.8.0,
but calls the INLA
built-in fmesher
standalone
programme for mesh construction and related operations. (From
INLA
version 23.06.29)2L
uses the full range of fmesher
package
methods, and does not use the standalone fmesher
programme.
(From INLA
around version 23.08.20)fmesher.evolution.warn
, logical: When
TRUE
, INLA
will show deprecation methods for
all the methods in INLA
that are being replaced by
fmesher
package methods. When FALSE
, no
warnings will be shown. Set this option to TRUE
if you want
to update your own code, but keep it at FALSE
when you need
to run existing code without changing it.
fmesher.evolution.verbosity
, character: Either
“soft”, “warn”, or “stop”, indicating the minimum warning level when
fmesher.evolution.warn
is TRUE
. Set this to
“warn” or “stop” to get more immediate feedback when testing conversion
of old code, e.g. in package testing.
INLA | fmesher |
---|---|
inla.mesh.create() |
fm_rcdt_2d ()
,
fm_rcdt_2d_inla () |
inla.mesh.2d() |
fm_mesh_2d ()
,
fm_mesh_2d_inla () |
inla.delaunay() |
fm_delaunay_2d () |
inla.mesh.1d() |
fm_mesh_1d () |
inla.mesh.lattice() |
fm_lattice_2d () |
inla.mesh.segment() |
fm_segm () |
inla.nonconvex.hull() |
fm_nonconvex_hull () ,
fm_extensions ()
,
fm_simplify () |
inla.nonconvex.hull() ,
inla.contour.segment() ,
inla.simplify.curve() |
fm_nonconvex_hull_inla () ,
fm_simplify_helper ()
,
fm_segm_contour_helper () |
INLA | fmesher |
---|---|
inla.mesh.projector() |
fm_evaluator () |
inla.mesh.project() |
fm_evaluate () |
inla.spde.make.A() |
fm_basis ()
,
fm_row_kron ()
,
inlabru::bru_mapper_multi ()
,
inlabru::ibm_jacobian () ,
fm_block ()
,
fm_block_eval ()
,
inlabru::bru_mapper_aggregate () |
inla.mesh.deriv() |
fm_basis () |
INLA | fmesher | Comments |
---|---|---|
summary.inla.mesh() |
print.fm_mesh_2d () ,
print.fm_segm ()
,
print.fm_mesh_1d () |
Use print(mesh) etc. |
INLA | fmesher | Comments |
---|---|---|
inla.spTransform() |
fm_transform () |
|
mesh$crs |
fm_crs (mesh)
,
fm_CRS (mesh) |
The crs may now be stored in different formats; use
fm_crs() for sf format, and
fm_CRS() for sp format. fmesher
will attempt to convert when needed. |
mesh$crs<- |
fm_crs (mesh)<- |
Direct assignment of crs information should be avoided, but is allowed as long as its compatible with the actual mesh coordinates. |
INLA | fmesher | Comment |
---|---|---|
No ggplot support |
geom_fm (data = mesh) ,
geom_fm (data = segm) |
Use ggplot() + geom_fm(data = mesh) and
inlabru::gg() methods |
plot.inla.mesh(rgl = FALSE) |
plot.fm_mesh_2d ()
,
lines.fm_mesh_2d () |
Use plot() or lines() |
lines.inla.mesh.segment(rgl = FALSE) |
plot.fm_segm ()
,
lines.fm_segm () |
Use plot() or lines() |
plot.inla.mesh(rgl = TRUE) |
plot_rgl ()
,
lines_rgl () |
|
lines.inla.mesh.segment(rgl = TRUE) |
plot_rgl ()
,
lines_rgl () |