fido-package	fido_package
access_dims	access_dims
alr	alr
alrInv	alrInv
alrInv_array	alrInv_array
alr_array	alr_array
as.list.orthusfit	as.list.orthusfit
as.list.pibblefit	as.list.pibblefit
as.orthusfit	as.orthusfit
as.pibblefit	as.pibblefit
basset	basset_fit
basset_fit	basset_fit
check_dims	check_dims
clr_array	clr_array
coef.orthusfit	coef.orthusfit
coef.pibblefit	coef.pibblefit
conjugateLinearModel	conjugateLinearModel
convert_orthus_covariance	convert_orthus_covariance
create_default_ilr_base	create_default_ilr_base
fido	fido_package
fido_package	fido_package
fido_transforms	fido_transforms
gather_array	gather_array
gradPibbleCollapsed	loglikPibbleCollapsed
hessPibbleCollapsed	loglikPibbleCollapsed
kernels	kernels
lambda_to_iqlr	lambda_to_iqlr
LINEAR	kernels
lmvgamma	lmvgamma
lmvgamma_deriv	lmvgamma_deriv
loglikPibbleCollapsed	loglikPibbleCollapsed
mallard	mallard
mallard_family	mallard_family
metadata	metadata
miniclo	miniclo
miniclo_array	miniclo_array
mongrel	mongrel-deprecated
mongrel-deprecated	mongrel-deprecated
name	name
name.orthusfit	name.orthusfit
name.pibblefit	name.pibblefit
names_categories	name_dims
names_categories.pibblefit	name_dims
names_categories<-	name_dims
names_categories<-.pibblefit	name_dims
names_coords	name_dims
names_coords.pibblefit	name_dims
names_covariates	name_dims
names_covariates.pibblefit	name_dims
names_covariates<-	name_dims
names_covariates<-.pibblefit	name_dims
names_samples	name_dims
names_samples.pibblefit	name_dims
names_samples<-	name_dims
names_samples<-.pibblefit	name_dims
name_dims	name_dims
ncategories	access_dims
ncategories.orthusfit	access_dims
ncategories.pibblefit	access_dims
ncovariates	access_dims
ncovariates.orthusfit	access_dims
ncovariates.pibblefit	access_dims
niter	access_dims
niter.orthusfit	access_dims
niter.pibblefit	access_dims
nsamples	access_dims
nsamples.orthusfit	access_dims
nsamples.pibblefit	access_dims
oalr	orthus_lr_transforms
oalrInv	orthus_lr_transforms
oalrvar2alrvar	convert_orthus_covariance
oalrvar2clrvar	convert_orthus_covariance
oalrvar2ilrvar	convert_orthus_covariance
oclr	orthus_lr_transforms
oclrInv	orthus_lr_transforms
oclrvar2alrvar	convert_orthus_covariance
oclrvar2ilrvar	convert_orthus_covariance
oglr	orthus_lr_transforms
oglrInv	orthus_lr_transforms
oilr	orthus_lr_transforms
oilrInv	orthus_lr_transforms
oilrvar2alrvar	convert_orthus_covariance
oilrvar2clrvar	convert_orthus_covariance
oilrvar2ilrvar	convert_orthus_covariance
optimPibbleCollapsed	optimPibbleCollapsed
orthus	orthus_fit
orthusfit	orthusfit
orthus_fit	orthus_fit
orthus_lr_transforms	orthus_lr_transforms
orthus_sim	orthus_sim
orthus_tidy_samples	orthus_tidy_samples
pcrbias_mock	pcrbias_mock
pibble	pibble_fit
pibblefit	pibblefit
pibble_fit	pibble_fit
pibble_sim	pibble_sim
pibble_tidy_samples	pibble_tidy_samples
plot.pibblefit	plot.pibblefit
ppc	ppc
ppc.pibblefit	ppc.pibblefit
ppc_summary	ppc_summary
ppc_summary.pibblefit	ppc_summary
predict.bassetfit	predict.bassetfit
predict.pibblefit	predict.pibblefit
print.orthusfit	print.orthusfit
print.pibblefit	print.pibblefit
r2	r2
r2.bassetfit	r2
r2.pibblefit	r2
random_pibble_init	random_pibble_init
reapply_coord	store_coord
refit	refit
refit.bassetfit	basset_fit
refit.pibblefit	pibble_fit
req	req
req.orthusfit	req.orthusfit
req.pibblefit	req.pibblefit
RISK_CCFA	RISK_CCFA
RISK_CCFA_otu	RISK_CCFA_otu
RISK_CCFA_sam	RISK_CCFA_sam
RISK_CCFA_tax	RISK_CCFA_tax
sample_prior	sample_prior
sample_prior.pibblefit	sample_prior.pibblefit
SE	kernels
store_coord	store_coord
summarise_posterior	summarise_posterior
summary.orthusfit	summary.orthusfit
summary.pibblefit	summary.pibblefit
to_alr	fido_transforms
to_alr.orthusfit	fido_transforms
to_alr.pibblefit	fido_transforms
to_clr	fido_transforms
to_clr.orthusfit	fido_transforms
to_clr.pibblefit	fido_transforms
to_ilr	fido_transforms
to_ilr.orthusfit	fido_transforms
to_ilr.pibblefit	fido_transforms
to_proportions	fido_transforms
to_proportions.orthusfit	fido_transforms
to_proportions.pibblefit	fido_transforms
uncollapsePibble	uncollapsePibble
uncollapsePibble_sigmaKnown	uncollapsePibble_sigmaKnown
verify	verify
verify.bassetfit	verify.bassetfit
verify.orthusfit	verify.orthusfit
verify.pibblefit	verify.pibblefit
Y	Y
