$,Bimap-method	Bimap-envirAPI
ACCNUM	colsAndKeytypes
AgiAnnDbMap	Bimap
AgiAnnDbMap-class	Bimap
ALIAS	colsAndKeytypes
AnnDbBimap	Bimap
AnnDbBimap-class	Bimap
AnnDbMap	Bimap
AnnDbMap-class	Bimap
AnnDbObj	AnnDbObj-class
AnnDbObj-class	AnnDbObj-class
AnnDbObj-objects	AnnDbObj-class
AnnDbPkg-checker	AnnDbPkg-checker
AnnObj	AnnotationDbi-internals
AnnObj-class	AnnotationDbi-internals
AnnotationDb	AnnotationDb-class
AnnotationDb-class	AnnotationDb-class
ARACYC	colsAndKeytypes
ARACYCENZYME	colsAndKeytypes
as.character,AnnDbBimap-method	BimapFormatting
as.character,FlatBimap-method	BimapFormatting
as.data.frame,Bimap-method	Bimap-toTable
as.data.frame.Bimap	Bimap-toTable
as.list	BimapFormatting
as.list,AgiAnnDbMap-method	BimapFormatting
as.list,Bimap-method	BimapFormatting
as.list,FlatBimap-method	BimapFormatting
as.list,GoAnnDbBimap-method	BimapFormatting
as.list,GOTermsAnnDbBimap-method	BimapFormatting
as.list,IpiAnnDbMap-method	BimapFormatting
as.list.Bimap	BimapFormatting
Bimap	Bimap
Bimap-class	Bimap
Bimap-direction	Bimap-direction
Bimap-envirAPI	Bimap-envirAPI
Bimap-keys	Bimap-keys
Bimap-toTable	Bimap-toTable
BimapFormatting	BimapFormatting
checkMAPCOUNTS	AnnDbPkg-checker
ChipDb-class	AnnotationDb-class
chooseCentralOrgPkgSymbol	AnnotationDbi-internals
CHR	colsAndKeytypes
CHRLOC	colsAndKeytypes
CHRLOCEND	colsAndKeytypes
class:AgiAnnDbMap	Bimap
class:AnnDbBimap	Bimap
class:AnnDbMap	Bimap
class:AnnDbObj	AnnDbObj-class
class:AnnObj	AnnotationDbi-internals
class:AnnotationDb	AnnotationDb-class
class:Bimap	Bimap
class:FlatBimap	AnnotationDbi-internals
class:Go3AnnDbBimap	Bimap
class:GOAllFrame	GOFrame
class:GoAnnDbBimap	Bimap
class:GOFrame	GOFrame
class:GOTerms	GOTerms-class
class:GOTermsAnnDbBimap	Bimap
class:IpiAnnDbMap	Bimap
class:KEGGFrame	KEGGFrame
class:L2Rlink	AnnotationDbi-internals
class:ProbeAnnDbBimap	Bimap
class:ProbeAnnDbMap	Bimap
class:ProbeGo3AnnDbBimap	Bimap
class:ProbeIpiAnnDbMap	Bimap
colmetanames	Bimap-toTable
colmetanames,AnnDbBimap-method	Bimap-toTable
colmetanames,FlatBimap-method	Bimap-toTable
colnames	Bimap-toTable
colnames,AnnDbBimap-method	Bimap-toTable
colnames,FlatBimap-method	Bimap-toTable
cols	AnnotationDb-class
columns	AnnotationDb-class
columns,AnnotationDb-method	AnnotationDb-class
columns,ChipDb-method	AnnotationDb-class
columns,GODb-method	AnnotationDb-class
columns,Inparanoid8Db-method	AnnotationDb-class
columns,InparanoidDb-method	AnnotationDb-class
columns,OrgDb-method	AnnotationDb-class
columns,OrthologyDb-method	AnnotationDb-class
columns,ReactomeDb-method	AnnotationDb-class
COMMON	colsAndKeytypes
contents,Bimap-method	Bimap-envirAPI
count.links	Bimap-toTable
count.links,Bimap-method	Bimap-toTable
count.links,Go3AnnDbBimap-method	Bimap-toTable
count.mappedkeys	Bimap-keys
count.mappedkeys,ANY-method	Bimap-keys
count.mappedkeys,Bimap-method	Bimap-keys
count.mappedLkeys	Bimap-direction
count.mappedLkeys,AgiAnnDbMap-method	Bimap-direction
count.mappedLkeys,AnnDbBimap-method	Bimap-direction
count.mappedLkeys,Bimap-method	Bimap-direction
count.mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
count.mappedRkeys	Bimap-direction
count.mappedRkeys,AnnDbBimap-method	Bimap-direction
count.mappedRkeys,AnnDbMap-method	Bimap-direction
count.mappedRkeys,Bimap-method	Bimap-direction
count.mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
createAnnObjs.SchemaChoice	AnnotationDbi-internals
createSimpleBimap	createSimpleBimap
dbconn	AnnDbObj-class
dbconn,AnnDbObj-method	AnnDbObj-class
dbconn,AnnotationDb-method	AnnotationDb-class
dbconn,environment-method	AnnDbObj-class
dbconn,SQLiteConnection-method	AnnDbObj-class
dbfile	AnnDbObj-class
dbfile,AnnDbObj-method	AnnDbObj-class
dbfile,AnnotationDb-method	AnnotationDb-class
dbfile,environment-method	AnnDbObj-class
dbfile,SQLiteConnection-method	AnnDbObj-class
dbFileConnect	AnnotationDbi-internals
dbFileDisconnect	AnnotationDbi-internals
dbGetTable	AnnotationDbi-internals
dbInfo	AnnDbObj-class
dbInfo,AnnDbObj-method	AnnDbObj-class
dbInfo,DBIConnection-method	AnnDbObj-class
dbInfo,environment-method	AnnDbObj-class
dbmeta	AnnDbObj-class
dbmeta,AnnDbObj-method	AnnDbObj-class
dbmeta,DBIConnection-method	AnnDbObj-class
dbmeta,environment-method	AnnDbObj-class
dbschema	AnnDbObj-class
dbschema,AnnDbObj-method	AnnDbObj-class
dbschema,DBIConnection-method	AnnDbObj-class
dbschema,environment-method	AnnDbObj-class
debugSQL	AnnotationDbi-internals
DEFINITION	GOColsAndKeytypes
Definition	GOTerms-class
Definition,character-method	GOTerms-class
Definition,GOTerms-method	GOTerms-class
Definition,GOTermsAnnDbBimap-method	GOTerms-class
DESCRIPTION	colsAndKeytypes
dim,Bimap-method	Bimap-toTable
direction	Bimap-direction
direction,AnnDbBimap-method	Bimap-direction
direction,FlatBimap-method	Bimap-direction
direction<-	Bimap-direction
direction<-,AnnDbBimap-method	Bimap-direction
direction<-,AnnDbMap-method	Bimap-direction
direction<-,FlatBimap-method	Bimap-direction
eapply	Bimap-envirAPI
eapply,Bimap-method	Bimap-envirAPI
ENSEMBL	colsAndKeytypes
ENSEMBLPROT	colsAndKeytypes
ENSEMBLTRANS	colsAndKeytypes
ENTREZID	colsAndKeytypes
ENZYME	colsAndKeytypes
EVIDENCE	colsAndKeytypes
EVIDENCEALL	colsAndKeytypes
exists	Bimap-envirAPI
exists,ANY,ANY,Bimap-method	Bimap-envirAPI
exists,ANY,Bimap,missing-method	Bimap-envirAPI
filterSeeds	AnnotationDbi-internals
FlatBimap	AnnotationDbi-internals
FlatBimap-class	AnnotationDbi-internals
GENENAME	colsAndKeytypes
get	Bimap-envirAPI
get,ANY,ANY,Bimap-method	Bimap-envirAPI
get,ANY,Bimap,missing-method	Bimap-envirAPI
getBimapFilters	BimapFiltering
getBimapFilters,AnnDbBimap-method	BimapFiltering
getGOFrameData	GOFrame
getGOFrameData,GOAllFrame-method	GOFrame
getGOFrameData,GOFrame-method	GOFrame
getKEGGFrameData	KEGGFrame
getKEGGFrameData,KEGGAllFrame-method	KEGGFrame
getKEGGFrameData,KEGGFrame-method	KEGGFrame
getOrgPkgForSchema	AnnotationDbi-internals
GO	colsAndKeytypes
Go3AnnDbBimap	Bimap
Go3AnnDbBimap-class	Bimap
GOALL	colsAndKeytypes
GOAllFrame	GOFrame
GOAllFrame,GOFrame-method	GOFrame
GOAllFrame-class	GOFrame
GoAnnDbBimap	Bimap
GoAnnDbBimap-class	Bimap
GODb-class	AnnotationDb-class
GOFrame	GOFrame
GOFrame,data.frame,character-method	GOFrame
GOFrame,data.frame,missing-method	GOFrame
GOFrame-class	GOFrame
GOID	GOColsAndKeytypes
GOID,character-method	GOTerms-class
GOID,GOTerms-method	GOTerms-class
GOID,GOTermsAnnDbBimap-method	GOTerms-class
GOTerms	GOTerms-class
GOTerms-class	GOTerms-class
GOTermsAnnDbBimap	Bimap
GOTermsAnnDbBimap-class	Bimap
hasMultiProbes	BimapFiltering
hasMultiProbes,ProbeAnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeAnnDbMap-method	BimapFiltering
hasMultiProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeIpiAnnDbMap-method	BimapFiltering
hasSingleProbes	BimapFiltering
hasSingleProbes,ProbeAnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeAnnDbMap-method	BimapFiltering
hasSingleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
head,FlatBimap-method	Bimap-toTable
idConverter	inpIDMapper
initialize,FlatBimap-method	AnnotationDbi-internals
initialize,GOTerms-method	GOTerms-class
initialize,L2Rlink-method	AnnotationDbi-internals
InparanoidDb-class	AnnotationDb-class
inpIDMapper	inpIDMapper
INTERPRO	colsAndKeytypes
intraIDMapper	inpIDMapper
IPI	colsAndKeytypes
IpiAnnDbMap	Bimap
IpiAnnDbMap-class	Bimap
isNA	Bimap-keys
isNA,ANY-method	Bimap-keys
isNA,Bimap-method	Bimap-keys
isNA,environment-method	Bimap-keys
KEGGFrame	KEGGFrame
KEGGFrame,data.frame,character-method	KEGGFrame
KEGGFrame,data.frame,missing-method	KEGGFrame
KEGGFrame-class	KEGGFrame
keyname	Bimap-toTable
keyname,Bimap-method	Bimap-toTable
keys	AnnotationDb-class
keys,Bimap-method	Bimap-keys
keys,ChipDb-method	AnnotationDb-class
keys,GODb-method	AnnotationDb-class
keys,Inparanoid8Db-method	AnnotationDb-class
keys,InparanoidDb-method	AnnotationDb-class
keys,OrgDb-method	AnnotationDb-class
keys,OrthologyDb-method	AnnotationDb-class
keys,ReactomeDb-method	AnnotationDb-class
keys<-	Bimap-keys
keys<-,Bimap-method	Bimap-keys
keytypes	AnnotationDb-class
keytypes,ChipDb-method	AnnotationDb-class
keytypes,GODb-method	AnnotationDb-class
keytypes,Inparanoid8Db-method	AnnotationDb-class
keytypes,InparanoidDb-method	AnnotationDb-class
keytypes,OrgDb-method	AnnotationDb-class
keytypes,OrthologyDb-method	AnnotationDb-class
keytypes,ReactomeDb-method	AnnotationDb-class
L2Rlink	AnnotationDbi-internals
L2Rlink-class	AnnotationDbi-internals
length,Bimap-method	Bimap-keys
links	Bimap-toTable
links,AnnDbBimap-method	Bimap-toTable
links,Bimap-method	Bimap-toTable
links,FlatBimap-method	Bimap-toTable
links,Go3AnnDbBimap-method	Bimap-toTable
Lkeyname	Bimap-toTable
Lkeyname,AnnDbBimap-method	Bimap-toTable
Lkeyname,Bimap-method	Bimap-toTable
Lkeys	Bimap-direction
Lkeys,AnnDbBimap-method	Bimap-direction
Lkeys,FlatBimap-method	Bimap-direction
Lkeys,ProbeAnnDbBimap-method	Bimap-direction
Lkeys,ProbeAnnDbMap-method	Bimap-direction
Lkeys,ProbeGo3AnnDbBimap-method	Bimap-direction
Lkeys,ProbeIpiAnnDbMap-method	Bimap-direction
Lkeys<-	Bimap-direction
Lkeys<-,AnnDbBimap-method	Bimap-direction
Lkeys<-,FlatBimap-method	Bimap-direction
Llength	Bimap-direction
Llength,AnnDbBimap-method	Bimap-direction
Llength,Bimap-method	Bimap-direction
Llength,ProbeAnnDbBimap-method	Bimap-direction
Llength,ProbeAnnDbMap-method	Bimap-direction
Llength,ProbeGo3AnnDbBimap-method	Bimap-direction
Llength,ProbeIpiAnnDbMap-method	Bimap-direction
loadDb	AnnotationDb-class
ls	Bimap-envirAPI
ls,Bimap-method	Bimap-envirAPI
makeGOGraph	makeGOGraph
make_eg_to_go_map	make_eg_to_go_map
make_go_to_eg_map	make_eg_to_go_map
MAP	colsAndKeytypes
mapIds	AnnotationDb-class
mapIds,AnnotationDb-method	AnnotationDb-class
mapIds_base	AnnotationDbi-internals
mappedkeys	Bimap-keys
mappedkeys,Bimap-method	Bimap-keys
mappedkeys,environment-method	Bimap-keys
mappedkeys,vector-method	Bimap-keys
mappedLkeys	Bimap-direction
mappedLkeys,AgiAnnDbMap-method	Bimap-direction
mappedLkeys,AnnDbBimap-method	Bimap-direction
mappedLkeys,FlatBimap-method	Bimap-direction
mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
mappedRkeys	Bimap-direction
mappedRkeys,AnnDbBimap-method	Bimap-direction
mappedRkeys,AnnDbMap-method	Bimap-direction
mappedRkeys,FlatBimap-method	Bimap-direction
mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
mergeToNamespaceAndExport	AnnotationDbi-internals
metadata,AnnotationDb-method	AnnotationDb-class
mget	Bimap-envirAPI
mget,ANY,Bimap-method	Bimap-envirAPI
mget,Bimap-method	Bimap-envirAPI
names,AnnotationDb-method	AnnotationDb-class
NCBICHIP_DB_SeedGenerator	AnnotationDbi-internals
ncol	Bimap-toTable
ncol,Bimap-method	Bimap-toTable
nhit	Bimap-toTable
nhit,Bimap-method	Bimap-toTable
nhit,environment-method	Bimap-toTable
nhit,list-method	Bimap-toTable
nrow	Bimap-toTable
nrow,AnnDbBimap-method	Bimap-toTable
nrow,AnnDbTable-method	Bimap-toTable
nrow,Bimap-method	Bimap-toTable
nrow,FlatBimap-method	Bimap-toTable
nrow,Go3AnnDbBimap-method	Bimap-toTable
OMIM	colsAndKeytypes
ONTOLOGY	GOColsAndKeytypes
Ontology	GOTerms-class
Ontology,character-method	GOTerms-class
Ontology,GOTerms-method	GOTerms-class
Ontology,GOTermsAnnDbBimap-method	GOTerms-class
ONTOLOGYALL	colsAndKeytypes
ORF	colsAndKeytypes
organismKEGGFrame	organismKEGGFrame
OrgDb-class	AnnotationDb-class
orgPackageName	orgPackageName
OrthologyDb-class	AnnotationDb-class
PATH	colsAndKeytypes
PFAM	colsAndKeytypes
PMID	colsAndKeytypes
print.probetable	print.probetable
ProbeAnnDbBimap	Bimap
ProbeAnnDbBimap-class	Bimap
ProbeAnnDbMap	Bimap
ProbeAnnDbMap-class	Bimap
ProbeGo3AnnDbBimap	Bimap
ProbeGo3AnnDbBimap-class	Bimap
PROBEID	colsAndKeytypes
ProbeIpiAnnDbMap	Bimap
ProbeIpiAnnDbMap-class	Bimap
PROSITE	colsAndKeytypes
Rattribnames	Bimap-toTable
Rattribnames,AnnDbBimap-method	Bimap-toTable
Rattribnames,Bimap-method	Bimap-toTable
Rattribnames<-	Bimap-toTable
Rattribnames<-,AnnDbBimap-method	Bimap-toTable
Rattribnames<-,FlatBimap-method	Bimap-toTable
Rattribnames<-,Go3AnnDbBimap-method	Bimap-toTable
ReactomeDb-class	AnnotationDb-class
REFSEQ	colsAndKeytypes
resort_base	AnnotationDbi-internals
revmap	Bimap-direction
revmap,AnnDbBimap-method	Bimap-direction
revmap,Bimap-method	Bimap-direction
revmap,environment-method	Bimap-direction
revmap,list-method	Bimap-direction
Rkeyname	Bimap-toTable
Rkeyname,AnnDbBimap-method	Bimap-toTable
Rkeyname,Bimap-method	Bimap-toTable
Rkeys	Bimap-direction
Rkeys,AnnDbBimap-method	Bimap-direction
Rkeys,AnnDbMap-method	Bimap-direction
Rkeys,FlatBimap-method	Bimap-direction
Rkeys,Go3AnnDbBimap-method	Bimap-direction
Rkeys<-	Bimap-direction
Rkeys<-,AnnDbBimap-method	Bimap-direction
Rkeys<-,FlatBimap-method	Bimap-direction
Rlength	Bimap-direction
Rlength,AnnDbBimap-method	Bimap-direction
Rlength,AnnDbMap-method	Bimap-direction
Rlength,Bimap-method	Bimap-direction
Rlength,Go3AnnDbBimap-method	Bimap-direction
sample	Bimap-envirAPI
sample,Bimap-method	Bimap-envirAPI
sample,environment-method	Bimap-envirAPI
saveDb	AnnotationDb-class
saveDb,AnnotationDb-method	AnnotationDb-class
Secondary	GOTerms-class
Secondary,character-method	GOTerms-class
Secondary,GOTerms-method	GOTerms-class
Secondary,GOTermsAnnDbBimap-method	GOTerms-class
select	AnnotationDb-class
select,ChipDb-method	AnnotationDb-class
select,GODb-method	AnnotationDb-class
select,Inparanoid8Db-method	AnnotationDb-class
select,InparanoidDb-method	AnnotationDb-class
select,OrgDb-method	AnnotationDb-class
select,OrthologyDb-method	AnnotationDb-class
select,ReactomeDb-method	AnnotationDb-class
SGD	colsAndKeytypes
show,AnnDbBimap-method	Bimap
show,AnnDbTable-method	Bimap-keys
show,AnnotationDb-method	AnnotationDb-class
show,FlatBimap-method	Bimap
show,GOTerms-method	GOTerms-class
show,L2Rlink-method	AnnotationDbi-internals
showQCData	AnnotationDbi-internals
SMART	colsAndKeytypes
species	AnnotationDb-class
species,AnnotationDb-method	AnnotationDb-class
subset,AnnDbBimap-method	Bimap-direction
subset,Bimap-method	Bimap-direction
summary,AnnDbBimap-method	Bimap
summary,Bimap-method	Bimap
SYMBOL	colsAndKeytypes
Synonym	GOTerms-class
Synonym,character-method	GOTerms-class
Synonym,GOTerms-method	GOTerms-class
Synonym,GOTermsAnnDbBimap-method	GOTerms-class
tagname	Bimap-toTable
tagname,AnnDbBimap-method	Bimap-toTable
tagname,Bimap-method	Bimap-toTable
tail,FlatBimap-method	Bimap-toTable
TAIR	colsAndKeytypes
taxonomyId	AnnotationDb-class
taxonomyId,AnnotationDb-method	AnnotationDb-class
TERM	GOColsAndKeytypes
Term	GOTerms-class
Term,character-method	GOTerms-class
Term,GOTerms-method	GOTerms-class
Term,GOTermsAnnDbBimap-method	GOTerms-class
testForValidKeytype	AnnotationDbi-internals
testSelectArgs	AnnotationDbi-internals
toggleProbes	BimapFiltering
toggleProbes,ProbeAnnDbBimap-method	BimapFiltering
toggleProbes,ProbeAnnDbMap-method	BimapFiltering
toggleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
toggleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
toSQLStringSet	toSQLStringSet
toTable	Bimap-toTable
toTable,Bimap-method	Bimap-toTable
toTable,FlatBimap-method	Bimap-toTable
UNIGENE	colsAndKeytypes
UNIPROT	colsAndKeytypes
unlist2	unlist2
[,Bimap-method	Bimap-keys
[[,Bimap-method	Bimap-envirAPI
