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Class: DangleResidue


    Residue that holds Dangle angle predictions
Attributes
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Attribute Methods
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Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link dangleChain to class DangleChain
Main key: residue
Mandatory Attributes: phiPsiLikelihoodMatrix, residue
Known Subclasses: None
Children: None
Constructor: newObj = DangleResidue( dangleChain,phiPsiLikelihoodMatrix=value, residue=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
numIslands NonNegativeInt 0..1 Number of predicted 'islands'  
omegaLower NormDegAngle 0..1 lower omega value  
omegaUpper NormDegAngle 0..1 upper Omega value  
omegaValue NormDegAngle 0..1 predicted omega value  
phiLower NormDegAngle 0..1 lower phi value  
phiPsiLikelihoodMatrix Float 1296..1296 Phi/psi likelihood matrix. 36*36 float matrix, packed as list.  
phiUpper NormDegAngle 0..1 upper phi value  
phiValue NormDegAngle 0..1 Predicted phi value  
psiLower NormDegAngle 0..1 lower psi value  
psiUpper NormDegAngle 0..1 upper psi value  
psiValue NormDegAngle 0..1 predicted psi value  
secStrucCode ccp.api.molecule.Molecule.SecStrucCode 0..1 Secondary structure code.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
dangleChain DangleChain 1..1 (Parent link). parent link  
parent DangleChain 1..1 link to parent object - synonym for dangleChain  
residue ccp.api.molecule.MolSystem.Residue 1..1 Residue for which angles are predicted  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
numIslands
getNumIslands NonNegativeInt -
setNumIslands - NonNegativeInt
omegaLower
getOmegaLower NormDegAngle -
setOmegaLower - NormDegAngle
omegaUpper
getOmegaUpper NormDegAngle -
setOmegaUpper - NormDegAngle
omegaValue
getOmegaValue NormDegAngle -
setOmegaValue - NormDegAngle
phiLower
getPhiLower NormDegAngle -
setPhiLower - NormDegAngle
phiPsiLikelihoodMatrix
getPhiPsiLikelihoodMatrix Float Tuple -
setPhiPsiLikelihoodMatrix - Float List
phiUpper
getPhiUpper NormDegAngle -
setPhiUpper - NormDegAngle
phiValue
getPhiValue NormDegAngle -
setPhiValue - NormDegAngle
psiLower
getPsiLower NormDegAngle -
setPsiLower - NormDegAngle
psiUpper
getPsiUpper NormDegAngle -
setPsiUpper - NormDegAngle
psiValue
getPsiValue NormDegAngle -
setPsiValue - NormDegAngle
secStrucCode
getSecStrucCode ccp.api.molecule.Molecule.SecStrucCode -
setSecStrucCode - ccp.api.molecule.Molecule.SecStrucCode

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
dangleChain
getDangleChain DangleChain -
parent
getParent DangleChain -
residue
getResidue ccp.api.molecule.MolSystem.Residue -
setResidue - ccp.api.molecule.MolSystem.Residue

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey DangleResidue memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2007-10-01-14:13:59_00004

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Mon Mar 2 17:25:12 2015    from data model package  cambridge.api.Dangle.DangleResidue   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk