Data Model version 2.1.2
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Class: MolSystemLink


    Link between two ChemComps (bulding blocks) not already described in the Molecule description. Intended for intermolecular links, additional crosslinks, or links whose location was not known precisely when describing the Molecule. Disulfide bonds would be a good example for either category. Part of the description of MolSystem level additional links.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link molSystem to class MolSystem
Main key: molSystemLinkEnds
Mandatory Attributes: molSystemLinkEnds
Known Subclasses: None
Children: None
Constructor: newObj = MolSystemLink( molSystem,molSystemLinkEnds=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
dihedralAngle ccp.api.molecule.Molecule.LinkDihedralAngle 0..1 Approximate value in degrees of dihedral angle formed across bond (as defined in the ChemComp Link definitions). The value is not precise but serves to indicate the conformation of rotationally hindered bonds.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
molSystem MolSystem 1..1 (Parent link). parent link  
molSystemLinkEnds MolSystemLinkEnd 2..2 LinkEnds that make up the MolSystemLink  
parent MolSystem 1..1 link to parent object - synonym for molSystem  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
dihedralAngle
getDihedralAngle ccp.api.molecule.Molecule.LinkDihedralAngle -
setDihedralAngle - ccp.api.molecule.Molecule.LinkDihedralAngle

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
molSystem
getMolSystem MolSystem -
molSystemLinkEnds
getMolSystemLinkEnds MolSystemLinkEnd Set -
setMolSystemLinkEnds - MolSystemLinkEnd Set
sortedMolSystemLinkEnds MolSystemLinkEnd List -
findFirstMolSystemLinkEnd MolSystemLinkEnd keyword=value pairs
findAllMolSystemLinkEnds MolSystemLinkEnd Set keyword=value pairs
parent
getParent MolSystem -

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey MolSystemLink memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:54_00027

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Mon Mar 2 17:24:43 2015    from data model package  ccp.api.molecule.MolSystem.MolSystemLink   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk