Data Model version 2.1.2
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Class: Entry


    Database entry. This is a reference to an element in an outside database.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link database to class Database
Main key: serial
Mandatory Attributes: None
Known Subclasses: None
Children: None
Constructor: newObj = Entry( database, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
altCode Word 0..1 ALternative identifier - the exact meaning would depend on the database.  
code Word 0..1 The database code that identifies the reference. e.g. 'Q12178'. Some databases have two-oart codes, in which cse the subCode holds teh second part. E.g. the PDB has accession code and chain code.  
details String 0..1 Detail field for comments.  
name Word 0..1 Entry name, as used in the database.  
release Line 0..1 The database release.  
serial Int 1..1 Unique identifier.  
subCode Word 0..1 Second part of database unique identifie, for databases that have two-part codes. For e.g. the PDB the code would be the accession number and the subCode would be the chainCode.  
url String 0..1 The url of the database reference entry.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
alignments ccp.api.molecule.Molecule.Alignment 0..* Molecule alignments using DbRef.Entry  
blueprintDbRefs ccp.api.lims.ExpBlueprint.BlueprintDbRef 0..* The BlueprintDbRef list associated to a particular database reference.  
componentDbRefs ccp.api.lims.RefSampleComponent.ComponentDbRef 0..* The ComponentDbRef list associated to a particular database reference.  
database Database 1..1 (Parent link). parent link  
molSystems ccp.api.molecule.MolSystem.MolSystem 0..* MolSystems that use this DB reference  
parent Database 1..1 link to parent object - synonym for database  
targetGroups ccp.api.lims.Target.TargetGroup 0..*  
targets ccp.api.lims.Target.Target 0..*  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
altCode
getAltCode Word -
setAltCode - Word
code
getCode Word -
setCode - Word
details
getDetails String -
setDetails - String
name
getName Word -
setName - Word
release
getRelease Line -
setRelease - Line
serial
getSerial Int -
setSerial - Int
subCode
getSubCode Word -
setSubCode - Word
url
getUrl String -
setUrl - String

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
alignments
getAlignments ccp.api.molecule.Molecule.Alignment Set -
setAlignments - ccp.api.molecule.Molecule.Alignment Set
sortedAlignments ccp.api.molecule.Molecule.Alignment List -
findFirstAlignment ccp.api.molecule.Molecule.Alignment keyword=value pairs
findAllAlignments ccp.api.molecule.Molecule.Alignment Set keyword=value pairs
blueprintDbRefs
getBlueprintDbRefs ccp.api.lims.ExpBlueprint.BlueprintDbRef Set -
setBlueprintDbRefs - ccp.api.lims.ExpBlueprint.BlueprintDbRef Set
sortedBlueprintDbRefs ccp.api.lims.ExpBlueprint.BlueprintDbRef List -
findFirstBlueprintDbRef ccp.api.lims.ExpBlueprint.BlueprintDbRef keyword=value pairs
findAllBlueprintDbRefs ccp.api.lims.ExpBlueprint.BlueprintDbRef Set keyword=value pairs
componentDbRefs
getComponentDbRefs ccp.api.lims.RefSampleComponent.ComponentDbRef Set -
setComponentDbRefs - ccp.api.lims.RefSampleComponent.ComponentDbRef Set
sortedComponentDbRefs ccp.api.lims.RefSampleComponent.ComponentDbRef List -
findFirstComponentDbRef ccp.api.lims.RefSampleComponent.ComponentDbRef keyword=value pairs
findAllComponentDbRefs ccp.api.lims.RefSampleComponent.ComponentDbRef Set keyword=value pairs
database
getDatabase Database -
molSystems
getMolSystems ccp.api.molecule.MolSystem.MolSystem Set -
setMolSystems - ccp.api.molecule.MolSystem.MolSystem Set
sortedMolSystems ccp.api.molecule.MolSystem.MolSystem List -
addMolSystem - ccp.api.molecule.MolSystem.MolSystem
removeMolSystem - ccp.api.molecule.MolSystem.MolSystem
findFirstMolSystem ccp.api.molecule.MolSystem.MolSystem keyword=value pairs
findAllMolSystems ccp.api.molecule.MolSystem.MolSystem Set keyword=value pairs
parent
getParent Database -
targetGroups
getTargetGroups ccp.api.lims.Target.TargetGroup Set -
setTargetGroups - ccp.api.lims.Target.TargetGroup Set
sortedTargetGroups ccp.api.lims.Target.TargetGroup List -
addTargetGroup - ccp.api.lims.Target.TargetGroup
removeTargetGroup - ccp.api.lims.Target.TargetGroup
findFirstTargetGroup ccp.api.lims.Target.TargetGroup keyword=value pairs
findAllTargetGroups ccp.api.lims.Target.TargetGroup Set keyword=value pairs
targets
getTargets ccp.api.lims.Target.Target Set -
setTargets - ccp.api.lims.Target.Target Set
sortedTargets ccp.api.lims.Target.Target List -
addTarget - ccp.api.lims.Target.Target
removeTarget - ccp.api.lims.Target.Target
findFirstTarget ccp.api.lims.Target.Target keyword=value pairs
findAllTargets ccp.api.lims.Target.Target Set keyword=value pairs

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey Entry memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:54_00020

isImplicit:

False

Tag

Value
repositoryId $Id: $

Tag

Value
repositoryTag $Name: $

Special constructor code:

None

Special destructor code:

None

Special postDestructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.1.2
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Mon Mar 2 17:24:26 2015    from data model package  ccp.api.general.DbRef.Entry   revision ?  
  Work done by the CCPN team.
www.ccpn.ac.uk