>Agrobacterium   tumefaciens 6
CGA---CCUGGUGGUCAUCGC-GG-G-GCGGCUGCACCCGUUCCCUUUCCGAA-CACGGCCGUGAAACGCCCCAGCGCC-
--A-AUGGUACUUCGUCUC---AAGACG---CGGGAG-AGU-A-GGUCGCUGC---CAGGUCU
>Halorubrum   distributum 1
G------UAGGCGGCCAAAGC-GG-C-AGGGAAAGACCCGUACCCAUUCCGAA-CACGGAAGUGAAGCCUGCCAGCGUAC
CAG-CUAGUACUGGAGUGGGAGACCCUC---UGGGAG-CGC-U-GGUUCGCCG---CCUACUC
>Campylobacter   jejuni 3
AU----GUCCGUGAUUAUACA-GA-U-GUGGAAACGCCUUGCUCCAUCCCGAA-CCAAGAAGCUAAGCACAUCGUGGGU-
--G-AUGAUACUACGCCUU-ACUGGCAG---GGGGAA-AGU-A-GCUCAUUG----CGGACUU
>Methanococcus   
UGA---CAUAACGGUCAAAGC-GG-A-GGUGUAACAUCCGAUCCCAUCCCGAU-CUCGGAAAUUAAGCCCUCCAGCGAU-
--U-CUUUAAGUACUGCUA---U-CUAG---UGGGAACAAA-G-UGACGCCGU---UAGUCAC
>Nanoarchaeum   equitans 1
GUUUCGUGGGAGGGCCAUAGC-GG-CCCGGGAACCACCCGUACCCAUCUCGAA-CACGGAAGUUAAGCCGGGCCGCGUCC
CGA-GUGGUACUGCCCC--GCGAAGGGG---UGGGAA-GCU-C--------GG---GAUGCCC
>Dictyostelium   discoideum 1
G------UAUACGGCCAUACU-AG-G-UUGGAAACACAUCAUCCCGU-UCGAU-CUGAUAAGUAAAUCGACCUCAGGCC-
UUC-CAAGUACUCUGGUUGGAGACAACA---GGGGAA-CAU-A-GGGUGCUGU-----AUACU
>Thermoplasma   
G------GCAACGGUCAUAGC-AG-C-AGGGAAACACCAGAUCCCAUUCCGAA-CUCGACGGUUAAGCCUGCUGCGUAU-
UGC-GUUGUACUGUAUGCCGCGAGGGUA---CGGGAA-GCGCA-AUAUGCUGU---UACCACU
>Pyrobaculum   aerophilum 1
GCCCC-UAACCCGGCCAUAGGCGC-C-GGUGAUACGCCCGGUCUCAU-CAGAA-CCCGGAAGCUAAGGCCGGCGCCGCGC
UCG-GGAGUACUGGGCUCCGCGAGGGCC---CGGGAA-ACC-G-GCGUGCUGGGAGGGGGCUU
>Drosophila   melanogaster 1
G------CCAACGACCAUACC-AC-G-CUGAAUACAUCGGUUCUCGU-CCGAU-CACCGAAAUUAAGCAGCGUCGGGCG-
CGG-UUAGUACUUAGAUGGGGGACCGCU---UGGGAA-CAC-C-GCGUGUUGU----UGGCCU
>Caenorhabditis   elegans 1
G------CUUACGACCAUAUC-AC-G-UUGAAUGCACGCCAUCCCGU-CCGAU-CUGGCAAGUUAAGCAACGUUGAGUC-
CAG-UUAGUACUUGGAUCGGAGACGGCC---UGGGAA-UCC-U-GGAUGUUGU-----AAGCU
>Thermococcus   
GG----UACGGCGGUCAUAGC-GG-C-GGGGUCACACCCGGUCUCGUUUCGAC-CCCGGAAGUUAAGCCCGCCAGCGAUC
CCG-GUUGUACUGCCCUCCGGGAGGGGG---CGGGAA-CCG-G-GGACGCCGC---CGGCCAC
>Methanothermobacter   
G------UUGGCGGUCAUGGC-GU-G-GGGUUUAUACCUGAUCUCGUUUCGAU-CUCAGUAGUUAAGUCCUGCUGCGUUG
UGGGUGUGUACUGCGGUUU--UUUGCUG---UGGGAA-GCCCA-CUUCACUGC---CAGACAA
>Cryptosporidium   parvum 1
G------CAAUCGGCCAUACU-AC-A-UCGAAUAUACCGGAUCCCAU-CAGAA-CUCCGAAGUCAAGCGGUGUAAGGUU-
CGG-UUAGUACUAGGGUGGGGGACCACC---UGGGAA-GACCA-GAAUGUCGA---UCGCCUC
>Nosema   bombycis 1
G-------AUACGGUUAUAUU-UA-C-UGAAAACCACCGGAACCCAU-CAGAA-CUCCGAAGUUAAACCAGUAUGAGCU-
UAA-UUAGUACUAAGAAGGGAGACCACU---UGGGAA-CGU-U-GGG-----------UGGUA
>Sulfolobus   
GC----CCACCCGGUCACAGU-GA-G-CGGGCAACACCCGGACUCAUUUCGAA-CCCGGAAGUUAAGCCGCUCACGUUA-
G-U-GGGGCCGUGGAUACCGUGAGGAUCCGCAGCCCC-ACU-A-AGCUGGGAU---GGGUUUU
>Bacillus   anthracis 1
U------UUGGUGAUGAUGGC-AG-A-GAGGUCACACCCGUUCCCAUACCGAA-CACGGAAGUUAAGCUCUCUAGCGCC-
--G-AUGGUAGUUGGGACC--UUGUCCC---UGUGAG-AGU-A-GGACGUCG-----CCAAGC
>Thermus   
AAUC--CCCCGUGCCCAUAGC-GG-C-GUGGAACCACCCGUUCCCAUUCCGAA-CACGGAAGUGAAACGCGCCAGCGCC-
--G-AUGGUACUGGGCGGG-CGACCGCC---UGGGAG-AGU-A-GGUCGGUGC---GGGGGAU
>Candida   albicans 1
G------GUUGCGGCCAUAUC-UA-G-CAGAAAGCACCGUUCCCCGU-UCGAUCAACCGUAGUUAAGCUGCUAAGAGCAA
UAC-CGAGUAGUGUAGUGGGAGACCAUA---CGCGAA-ACU-A-UUGUGCUGC-----AAUCU
>Homo
G------UCUACGGCCAUACC-AC-C-CUGAACGCGCCCGAUCUCGU-CUGAU-CUCGGAAGCUAAGCAGGGUCGGGCC-
UGG-UUAGUACUUGGAUGGGAGACCGCC---UGGGAA-UAC-C-GGGUGCUGU---AGGCUUU
>Escherichia   
UG----CCUGGCGGCCGUAGC-GC-G-GUGGUCCCACCUGACCCCAUGCCGAA-CUCAGAAGUGAAACGCCGUAGCGCC-
--G-AUGGUAGUGUGGG-G-UCUCCCCA---UGCGAG-AGU-A-GGGAACUGC---CAGGCAU
>Zea   mays 1
G------GAUGCGAUCAUACC-AG-C-ACUAAAGCACCGGAUCCCAU-CAGAA-CUCCGAAGUUAAGCGUGCUUGGGCG-
AGA-GUAGUACUAGGAUGGGUGACCUCC---UGGGAA-GUC-C-UCGUGUUGC-----AUUCC
>Methanospirillum   hungatei 1
UC----AAUAGCGGCCACAGC-AG-G-UGUGUCACACCCGUUCCCAUUCCGAA-CACGGAAGUUAAGACACCUCACGUGG
AUG-ACGGUACUGAGGUACGCGAGUCCU---CGGGAA-AUC-AUCCUCGCUGC---UAUUGUU
>Euglena   
G------AGUACGGCCAUACU-AC-C-GGGAAUACACCUGAACCCGU-UCGAU-UUCAGAAGUUAAGCCGGGUUAGGCC-
CAG-UUAGUACUGAG-UGGGCGACCACU---UGGGAA-CAC-U-GGGUGCUGU----ACGCUU
>Thermotoga   maritima 1
AUCC--CCGGGUGCCGAUACU-GGGG-CGGGAAACACCCGGUUCCAUUCCGAA-CCCGGCCGUUAAGCCGCCCUGGGCC-
--G-AUGGUAGUAUGGGGG-CAGCCCCA---UGCGAG-AGU-A-GGUAGCGCC---CGGGGAU
>Flavobacterium   hydatis 1
U------AAGGUGGUUAUUGC-GG-C-GGGGCUCGACCUCUUCCCAUCCCGAA-CAGAGUAGUUAAGCCCGCCUGCGCA-
--G-AUGGUACUGCAGUUA-------UG---UGGGAG-AGU-A-UGUCGUCG-----CCUUUC
