Package: vcfR
Title: Manipulate and Visualize VCF Data
Description: Facilitates easy manipulation of variant call format (VCF) data.
    Functions are provided to rapidly read from and write to VCF files. Once
    VCF data is read into R a parser function extracts matrices of data. This
    information can then be used for quality control or other purposes. Additional
    functions provide visualization of genomic data. Once processing is complete
    data may be written to a VCF file (*.vcf.gz). It also may be converted into
    other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between
    VCF data and familiar R software.
Version: 1.15.0
Authors@R: c(
    person(c("Brian", "J."), "Knaus", role = c("cre", "aut"),
    email = "briank.lists@gmail.com", comment = c(ORCID = "0000-0003-1665-4343")),
    person(c("Niklaus", "J."), "Grunwald", role = "aut",
    email = "grunwaln@science.oregonstate.edu", comment = c(ORCID = "0000-0003-1656-7602")),
    person(c("Eric", "C."), "Anderson", role = "ctb",
    email = "eric.anderson@noaa.gov", comment = c(ORCID = "0000-0003-1326-0840")),
    person(c("David", "J."), "Winter", role = "ctb",
    email = "david.winter@gmail.com"),
    person(c("Zhian", "N."), "Kamvar", role = "ctb",
    email = "zkamvar@gmail.com", comment = c(ORCID = "0000-0003-1458-7108")),
    person(c("Javier", "F."), "Tabima", role = "ctb",
    email = "caifaz01@gmail.com", comment = c(ORCID = "0000-0002-3603-2691"))
    )
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
URL: https://github.com/knausb/vcfR,
        https://knausb.github.io/vcfR_documentation/
Depends: R (>= 3.0.1)
LinkingTo: Rcpp
Imports: ape, dplyr, graphics, grDevices, magrittr, memuse, methods,
        pinfsc50, Rcpp, stats, stringr, tibble, utils, vegan,
        viridisLite
Suggests: adegenet, ggplot2, knitr, poppr, reshape2, rmarkdown, scales,
        testthat, tidyr
VignetteBuilder: knitr
License: GPL-3
RoxygenNote: 7.2.3
Encoding: UTF-8
Author: Brian J. Knaus [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-1665-4343>),
  Niklaus J. Grunwald [aut] (ORCID:
    <https://orcid.org/0000-0003-1656-7602>),
  Eric C. Anderson [ctb] (ORCID: <https://orcid.org/0000-0003-1326-0840>),
  David J. Winter [ctb],
  Zhian N. Kamvar [ctb] (ORCID: <https://orcid.org/0000-0003-1458-7108>),
  Javier F. Tabima [ctb] (ORCID: <https://orcid.org/0000-0002-3603-2691>)
Built: R 4.5.1; powerpc-apple-darwin10.8.0; 2025-07-11 16:08:39 UTC; unix
