Type: Package
Package: sdmTMB
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Version: 0.7.2
Authors@R: c(
    person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9563-1937")),
    person(c("Eric", "J."), "Ward", role = "aut",
           comment = c(ORCID = "0000-0002-4359-0296")),
    person(c("Philina", "A."), "English", role = "aut",
           comment = c(ORCID = "0000-0003-2992-6782")),
    person(c("Lewis", "A.", "K."), "Barnett", role = "aut",
           comment = c(ORCID = "0000-0002-9381-8375")),
    person(c("James", "T."), "Thorson", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0001-7415-1010", "VAST author")),
    person("Joe", "Watson", role = "ctb", comment = "Censored Poisson"),
    person("Julia", "Indivero", role = c("ctb"),
           comment = c("Vignette writing")),
    person(c("Jillian", "C."), "Dunic", role = c("ctb"),
           comment = c(ORCID = "0000-0002-0729-3083")),
    person(c("Cole", "C."), "Monnahan", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-0871-6700", "VAST contributor")),
    person("Mollie", "Brooks", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-6963-8326", "glmmTMB author")),
    person("Ben", "Bolker", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-2127-0443", "glmmTMB author")),
    person("Kasper", "Kristensen", role = c("ctb", "cph"),
           comment = "TMB/glmmTMB author"),
    person("Martin", "Maechler", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-8685-9910", "glmmTMB author")),
    person("Arni", "Magnusson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-2769-6741", "glmmTMB author")),
    person(c("Hans", "J."), "Skaug", role = c("ctb", "cph"),
           comment = "glmmTMB author, SPDE barrier"),
    person("Anders", "Nielsen", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-9683-9262", "glmmTMB author")),
    person("Casper", "Berg", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-3812-5269", "glmmTMB author")),
    person("Koen", "van Bentham", role = c("ctb", "cph"),
           comment = "glmmTMB author"),
    person(c("Olav", "Nikolai"), "Breivik", role = c("ctb", "cph"),
           comment = "SPDE barrier"),
    person("Simon", "Wood", role = c("ctb", "cph"),
           comment = "mgcv: smoother prediction"),
    person("Paul-Christian", "Bürkner", role = c("ctb", "cph"),
           comment = "brms: smoother matrix parsing"),
    person(paste("His Majesty the King in Right of Canada, as represented by",
           "the Minister of the Department of Fisheries and Oceans"),
           role = "cph")
  )
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
    Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
    Differential Equation) Gaussian Markov random field approximation to
    Gaussian random fields. One common application is for spatially explicit
    species distribution models (SDMs).
    See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
License: GPL-3
Copyright: inst/COPYRIGHTS
URL: https://pbs-assess.github.io/sdmTMB/,
        https://github.com/pbs-assess/sdmTMB
BugReports: https://github.com/pbs-assess/sdmTMB/issues
Depends: R (>= 4.1.0)
Imports: assertthat, abind, cli, fmesher, fishMod, generics, graphics,
        lifecycle, lme4, Matrix, methods, mgcv, mvtnorm, nlme, rlang,
        stats, TMB (>= 1.8.0)
Suggests: DHARMa, dplyr, effects (>= 4.0-1), estimability, emmeans (>=
        1.4), future, future.apply, ggeffects, ggforce, glmmTMB,
        ggplot2, knitr, rmarkdown, sf, spatstat.data, splancs,
        testthat, tibble, visreg
LinkingTo: RcppEigen, TMB
VignetteBuilder: knitr
ByteCompile: true
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
SystemRequirements: GNU make
NeedsCompilation: yes
Packaged: 2025-06-19 20:26:24 UTC; seananderson
Author: Sean C. Anderson [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9563-1937>),
  Eric J. Ward [aut] (ORCID: <https://orcid.org/0000-0002-4359-0296>),
  Philina A. English [aut] (ORCID:
    <https://orcid.org/0000-0003-2992-6782>),
  Lewis A. K. Barnett [aut] (ORCID:
    <https://orcid.org/0000-0002-9381-8375>),
  James T. Thorson [aut, cph] (ORCID:
    <https://orcid.org/0000-0001-7415-1010>, VAST author),
  Joe Watson [ctb] (Censored Poisson),
  Julia Indivero [ctb] (Vignette writing),
  Jillian C. Dunic [ctb] (ORCID: <https://orcid.org/0000-0002-0729-3083>),
  Cole C. Monnahan [ctb, cph] (ORCID:
    <https://orcid.org/0000-0003-0871-6700>, VAST contributor),
  Mollie Brooks [ctb, cph] (ORCID:
    <https://orcid.org/0000-0001-6963-8326>, glmmTMB author),
  Ben Bolker [ctb, cph] (ORCID: <https://orcid.org/0000-0002-2127-0443>,
    glmmTMB author),
  Kasper Kristensen [ctb, cph] (TMB/glmmTMB author),
  Martin Maechler [ctb, cph] (ORCID:
    <https://orcid.org/0000-0002-8685-9910>, glmmTMB author),
  Arni Magnusson [ctb, cph] (ORCID:
    <https://orcid.org/0000-0003-2769-6741>, glmmTMB author),
  Hans J. Skaug [ctb, cph] (glmmTMB author, SPDE barrier),
  Anders Nielsen [ctb, cph] (ORCID:
    <https://orcid.org/0000-0001-9683-9262>, glmmTMB author),
  Casper Berg [ctb, cph] (ORCID: <https://orcid.org/0000-0002-3812-5269>,
    glmmTMB author),
  Koen van Bentham [ctb, cph] (glmmTMB author),
  Olav Nikolai Breivik [ctb, cph] (SPDE barrier),
  Simon Wood [ctb, cph] (mgcv: smoother prediction),
  Paul-Christian Bürkner [ctb, cph] (brms: smoother matrix parsing),
  His Majesty the King in Right of Canada, as represented by the Minister
    of the Department of Fisheries and Oceans [cph]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Repository: CRAN
Date/Publication: 2025-06-19 21:20:02 UTC
Built: R 4.5.1; powerpc-apple-darwin10.8.0; 2025-06-20 21:30:38 UTC; unix
