# Extracting and Visualizing Output from 'jagsUI'

## Documentation for package ‘jagshelper’ version 0.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

jagshelper-package | Functions for Extracting and Visualizing Output from 'jagsUI'
asdf_jags_out | Example data: asdf jags out
asdf_prior_jags_out | Example data: asdf prior jags out
caterpillar | Caterpillar plot
chaindens_df | By-chain kernel density of each column of a 'data.frame'.
chaindens_jags | By-chain kernel densities of 'jagsUI' object
chaindens_line | Simple by-chain kernel density plot
check_neff | Quick summary of n.eff values by parameter name
check_Rhat | Quick summary of Rhat values by parameter name
comparecat | Compare Caterpillar Plots
comparedens | Compare Density
comparepriors | Compare Priors
cor_jags | Correlation matrix from a JAGS object
crossplot | Bivariate Plot of Posterior Densities
envelope | Envelope plot
expit | Expit, or inverse logit
jagshelper | Functions for Extracting and Visualizing Output from 'jagsUI'
jags_df | Extract data.frame
jags_plist | Plist
logit | Logit
nbyname | Number of parameter nodes by parameter name
nparam | Number of parameters
overlayenvelope | Overlay envelope plots
pairstrace_jags | Pairs trace plot
plotcor_jags | Plot a correlation matrix from a JAGS object
plotdens | Plot kernel densities of single parameter nodes
plotRhats | Plotting all Rhat values
plot_postpred | Diagnostic plots from posterior predictive distribution
pull_post | Subset from posterior data.frame
qq_postpred | Quantile-quantile plot from posterior predictive distribution
rcolors | Random Colors
skeleton | Skeleton
SS_data | Example data: Time series associated with SS JAGS out
SS_out | Example data: SS JAGS out
tracedens_jags | Combination of trace plots and by-chain kernel densities of 'jagsUI' object
traceworstRhat | Trace plots corresponding to the worst values of Rhat
trace_df | Trace plot of each column of a 'data.frame'.
trace_jags | Trace plot of jagsUI object
trace_line | Simple trace plot
ts_postpred | Time series plot of centered posterior predictive distribution