# Bayesian Treed Distributed Lag Models

## Documentation for package ‘dlmtree’ version 1.0.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

adj_coexposure | Adjusting for expected changes in co-exposure (TDLMM)
coExp | Randomly sampled exposure from Colorado counties
combine.models | Combines information from DLMs of single exposure
combine.models.tdlmm | Combines information from DLMs of mixture exposures.
cppIntersection | fast set intersection tool assumes sorted vectors A and B
dlmEst | Calculates the distributed lag effect with DLM matrix for linear models.
dlmtree | Fit tree structured distributed lag models
dlmtreeGPFixedGaussian | dlmtree model with fixed Gaussian process approach
dlmtreeGPGaussian | dlmtree model with Gaussian process approach
dlmtreeHDLMGaussian | dlmtree model with shared HDLM approach
dlmtreeHDLMMGaussian | dlmtree model with HDLMM approach
dlmtreeTDLMFixedGaussian | dlmtree model with fixed Gaussian approach
dlmtreeTDLMNestedGaussian | dlmtree model with nested Gaussian approach
dlmtreeTDLM_cpp | dlmtree model with nested HDLM approach
dlnmEst | Calculates the distributed lag effect with DLM matrix for non-linear models.
dlnmPLEst | Calculates the distributed lag effect with DLM matrix for non-linear models.
drawTree | Draws a new tree structure
estDLM | Calculates subgroup-specific lag effects for heterogeneous models
exposureCov | Exposure covariance structure
mixEst | Calculates the lagged interaction effects with MIX matrix for linear models.
monotdlnm_Cpp | dlmtree model with monotone tdlnm approach
pip | Calculates posterior inclusion probabilities (PIPs) for modifiers in HDLM & HDLMM
plot.summary.monotone | Returns variety of plots for model summary of class 'monotone'
plot.summary.tdlm | Plots a distributed lag function for model summary of 'tdlm'
plot.summary.tdlmm | Plots DLMMs for model summary of class 'tdlmm'
plot.summary.tdlnm | Returns variety of plots for model summary of class 'tdlnm'
pm25Exposures | PM2.5 Exposure data
ppRange | Makes a 'pretty' output of a group of numbers
predict.dlmtree | Calculates predicted response for HDLM & HDLMM
print.hdlm | Print a hdlm Object
print.hdlmm | Print a hdlmm Object
print.monotone | Print a monotone Object
print.summary.hdlm | Prints an overview with summary of model class 'hdlm'
print.summary.hdlmm | Prints an overview with summary of model class 'hdlmm'
print.summary.monotone | Prints an overview with summary of model class 'monotone'
print.summary.tdlm | Prints an overview with summary of model class 'tdlm'
print.summary.tdlmm | Prints an overview with summary of model class 'tdlmm'
print.summary.tdlnm | Prints an overview with summary of model class 'tdlnm'
print.tdlm | Print a tdlm Object
print.tdlmm | Print a tdlmm Object
print.tdlnm | Print a tdlnm Object
rcpp_pgdraw | Multiple draw polya gamma latent variable for var c[i] with size b[i]
rtmvnorm | Truncated multivariate normal sampler, mean mu, cov sigma, truncated (0, Inf)
ruleIdx | Calculates the weights for each modifier rule
sbd_dlmtree | Simulated covariates and exposures in the context of association between birth weight and maternal exposure to environmental chemicals
scaleModelMatrix | Centers and scales a matrix
shiny | shiny
shiny.hdlm | Executes a shiny app for HDLM.
shiny.hdlmm | Executes a shiny app for HDLMM.
sim.hdlmm | Creates simulated data for HDLM & HDLMM
sim.tdlmm | Creates simulated data for TDLM & TDLMM
sim.tdlnm | Creates simulated data for TDLNM
splitPIP | Calculates the posterior inclusion probability (PIP).
splitpoints | Determines split points for continuous modifiers
summary.hdlm | Creates a summary object of class 'hdlm'
summary.hdlmm | Creates a summary object of class 'hdlmm'
summary.monotone | Creates a summary object of class 'monotone'
summary.tdlm | Creates a summary object of class 'tdlm'
summary.tdlmm | Creates a summary object of class 'tdlmm'
summary.tdlnm | Creates a summary object of class 'tdlnm'
tdlmm | Treed Distributed Lag Mixture Models (Deprecated)
tdlmm_Cpp | dlmtree model with tdlmm approach
tdlnm | Treed Distributed Lag Non-Linear Models (Deprecated)
tdlnm_Cpp | dlmtree model with tdlnm approach
zeroToInfNormCDF | Integrates (0,inf) over multivariate normal
zinbCo | Time-series exposure data for ZINB simulated data