# Hierarchical Multinomial Processing Tree Modeling

## Documentation for package ‘TreeBUGS’ version 1.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

TreeBUGS-package | TreeBUGS: Hierarchical Multinomial Processing Tree Modeling
-.waic | WAIC: Widely Applicable Information Criterion
arnold2013 | Data of a Source-Monitoring Experiment
BayesFactorMPT | Bayes Factors for Simple (Nonhierarchical) MPT Models
BayesFactorSlope | Bayes Factor for Slope Parameters in Latent-Trait MPT
betaMPT | Fit a Hierarchical Beta-MPT Model
betaMPTcpp | C++ Sampler for Hierarchical Beta-MPT Model
betweenSubjectMPT | Between-Subject Comparison of Parameters
correlationPosterior | Posterior Distribution for Correlations
extendMPT | Extend MCMC Sampling for MPT Model
genBetaMPT | Generate Data for Beta MPT Models
genMPT | Generate MPT Frequencies
genTraitMPT | Generate Data for Latent-Trait MPT Models
getGroupMeans | Get Mean Parameters per Group
getParam | Get Parameter Posterior Statistics
getSamples | Get Posterior Samples from Fitted MPT Model
marginalMPT | Marginal Likelihood for Simple MPT
plot.betaMPT | Plot Convergence for Hierarchical MPT Models
plot.simpleMPT | Plot Convergence for Hierarchical MPT Models
plot.traitMPT | Plot Convergence for Hierarchical MPT Models
plotDistribution | Plot Distribution of Individual Estimates
plotFit | Plot Posterior Predictive Mean Frequencies
plotFreq | Plot Raw Frequencies
plotParam | Plot Parameter Estimates
plotPrior | Plot Prior Distributions
plotPriorPost | Plot Prior vs. Posterior Distribution
posteriorPredictive | Get Posterior Predictive Samples
PPP | Compute Posterior Predictive P-Values
print.waic | WAIC: Widely Applicable Information Criterion
print.waic_difference | WAIC: Widely Applicable Information Criterion
priorPredictive | Prior Predictive Samples
probitInverse | Probit-Inverse of Group-Level Normal Distribution
readEQN | Read multiTree files
simpleMPT | C++ Sampler for Standard (Nonhierarchical) MPT Models
summarizeMCMC | MCMC Summary
summarizeMPT | Summarize JAGS Output for Hierarchical MPT Models
testHetChi | Chi-Square Test of Heterogeneity
testHetPerm | Permutation Test of Heterogeneity
traitMPT | Fit a Hierarchical Latent-Trait MPT Model
transformedParameters | Get Transformed Parameters
TreeBUGS | TreeBUGS: Hierarchical Multinomial Processing Tree Modeling
WAIC | WAIC: Widely Applicable Information Criterion
withinSubjectEQN | Generate EQN Files for Within-Subject Designs