# Generated by roxygen2: do not edit by hand

S3method("[",reduced.dim.matrix)
S3method(as.matrix,LinearEmbeddingMatrix)
S3method(cbind,reduced.dim.matrix)
S3method(rbind,reduced.dim.matrix)
export("altExp<-")
export("altExpNames<-")
export("altExps<-")
export("colLabels<-")
export("colPair<-")
export("colPairNames<-")
export("colPairs<-")
export("cpm<-")
export("factorData<-")
export("featureLoadings<-")
export("int_colData<-")
export("int_elementMetadata<-")
export("int_metadata<-")
export("logcounts<-")
export("mainExpName<-")
export("normcounts<-")
export("reducedDim<-")
export("reducedDimNames<-")
export("reducedDims<-")
export("rowPair<-")
export("rowPairNames<-")
export("rowPairs<-")
export("rowSubset<-")
export("sampleFactors<-")
export("tpm<-")
export("weights<-")
export(LinearEmbeddingMatrix)
export(SingleCellExperiment)
export(altExp)
export(altExpNames)
export(altExps)
export(applySCE)
export(colLabels)
export(colPair)
export(colPairNames)
export(colPairs)
export(cpm)
export(factorData)
export(featureLoadings)
export(int_colData)
export(int_elementMetadata)
export(int_metadata)
export(logcounts)
export(mainExpName)
export(normcounts)
export(objectVersion)
export(reduced.dim.matrix)
export(reducedDim)
export(reducedDimNames)
export(reducedDims)
export(removeAltExps)
export(rowPair)
export(rowPairNames)
export(rowPairs)
export(rowSubset)
export(sampleFactors)
export(simplifyToSCE)
export(splitAltExps)
export(swapAltExp)
export(tpm)
export(unsplitAltExps)
exportClasses(LinearEmbeddingMatrix)
exportClasses(SingleCellExperiment)
exportClasses(reduced.dim.matrix)
exportMethods("$")
exportMethods("$<-")
exportMethods("[")
exportMethods("[<-")
exportMethods("altExp<-")
exportMethods("altExpNames<-")
exportMethods("altExps<-")
exportMethods("colLabels<-")
exportMethods("colPair<-")
exportMethods("colPairNames<-")
exportMethods("colPairs<-")
exportMethods("counts<-")
exportMethods("cpm<-")
exportMethods("dimnames<-")
exportMethods("factorData<-")
exportMethods("featureLoadings<-")
exportMethods("int_colData<-")
exportMethods("int_elementMetadata<-")
exportMethods("int_metadata<-")
exportMethods("logcounts<-")
exportMethods("mainExpName<-")
exportMethods("normcounts<-")
exportMethods("reducedDim<-")
exportMethods("reducedDimNames<-")
exportMethods("reducedDims<-")
exportMethods("rowPair<-")
exportMethods("rowPairNames<-")
exportMethods("rowPairs<-")
exportMethods("rowSubset<-")
exportMethods("sampleFactors<-")
exportMethods("sizeFactors<-")
exportMethods("tpm<-")
exportMethods("weights<-")
exportMethods(altExp)
exportMethods(altExpNames)
exportMethods(altExps)
exportMethods(as.matrix)
exportMethods(cbind)
exportMethods(coerce)
exportMethods(colData)
exportMethods(colLabels)
exportMethods(colPair)
exportMethods(colPairNames)
exportMethods(colPairs)
exportMethods(combineCols)
exportMethods(counts)
exportMethods(cpm)
exportMethods(dim)
exportMethods(dimnames)
exportMethods(factorData)
exportMethods(featureLoadings)
exportMethods(int_colData)
exportMethods(int_elementMetadata)
exportMethods(int_metadata)
exportMethods(logcounts)
exportMethods(mainExpName)
exportMethods(normcounts)
exportMethods(objectVersion)
exportMethods(parallel_slot_names)
exportMethods(rbind)
exportMethods(reducedDim)
exportMethods(reducedDimNames)
exportMethods(reducedDims)
exportMethods(rowData)
exportMethods(rowPair)
exportMethods(rowPairNames)
exportMethods(rowPairs)
exportMethods(rowSubset)
exportMethods(sampleFactors)
exportMethods(show)
exportMethods(sizeFactors)
exportMethods(tpm)
exportMethods(updateObject)
exportMethods(weights)
import(SummarizedExperiment)
import(methods)
importClassesFrom(S4Vectors,Annotated)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,SelfHits)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(S4Vectors,character_OR_NULL)
importClassesFrom(SummarizedExperiment,RangedSummarizedExperiment)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BiocGenerics,"counts<-")
importFrom(BiocGenerics,"sizeFactors<-")
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,counts)
importFrom(BiocGenerics,lapply)
importFrom(BiocGenerics,ncol)
importFrom(BiocGenerics,nrow)
importFrom(BiocGenerics,rbind)
importFrom(BiocGenerics,sizeFactors)
importFrom(BiocGenerics,updateObject)
importFrom(BiocGenerics,weights)
importFrom(BiocGenerics,which)
importFrom(DelayedArray,ConstantArray)
importFrom(DelayedArray,DelayedArray)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,I)
importFrom(S4Vectors,SelfHits)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,combineCols)
importFrom(S4Vectors,combineRows)
importFrom(S4Vectors,combineUniqueCols)
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,endoapply)
importFrom(S4Vectors,findMatches)
importFrom(S4Vectors,isSingleString)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,nnode)
importFrom(S4Vectors,normalizeSingleBracketSubscript)
importFrom(S4Vectors,parallel_slot_names)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,setValidity2)
importFrom(S4Vectors,subjectHits)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(SummarizedExperiment,rowRanges)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(stats,setNames)
importFrom(utils,packageVersion)
importFrom(utils,tail)
